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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs11871801 1 rs12948909 chr17:40570602 NAGLU chr17:40687951-40696464:+ -0.11 -3.52 0.000446 Crohn's disease
BRCA cis rs12971120 1 rs12971120 chr18:72174023 CNDP2 chr18:72163597-72188356:+ 0.22 4.73 2.59E-6 Refractive error
BRCA cis rs1133146 1 rs12971799 chr19:53667126 ZNF525 chr19:53868968-53889834:+ -0.13 -3.94 8.56E-5 Yu-Zhi constitution type in type 2 diabetes
BRCA cis rs12973620 1 rs12973620 chr19:58249643 ZNF419 chr19:57999079-58006048:+ -0.16 -3.42 0.000656 Allergic rhinitis
BRCA cis rs12973620 1 rs12973620 chr19:58249643 ZNF530 chr19:58111253-58124087:+ -0.18 -3.91 9.65E-5 Allergic rhinitis
BRCA cis rs7246967 1 rs12980225 chr19:23026745 ZNF492 chr19:22817126-22850472:+ -0.23 -5.13 3.52E-7 Bronchopulmonary dysplasia
BRCA cis rs12608504 1 rs12980403 chr19:18398139 JUND chr19:18390563-18392432:- -0.11 -3.56 0.00039 Waist-to-hip ratio adjusted for body mass index
BRCA cis rs12608504 1 rs12980403 chr19:18398139 KIAA1683 chr19:18367906-18385319:- -0.15 -4.6 4.78E-6 Waist-to-hip ratio adjusted for body mass index
BRCA cis rs2163813 1 rs12982273 chr19:19830144 ZNF14 chr19:19821281-19843921:- 0.18 4.78 1.97E-6 Toenail selenium levels
BRCA cis rs7246967 1 rs12983770 chr19:23023614 ZNF492 chr19:22817126-22850472:+ -0.23 -5.14 3.25E-7 Bronchopulmonary dysplasia
BRCA cis rs13010639 1 rs12988385 chr2:231036311 SP110 chr2:231033645-231084827:- 0.21 3.97 7.67E-5 Obesity-related traits
BRCA cis rs11689435 1 rs12992201 chr2:218312036 DIRC3 chr2:218148748-218621316:- -0.2 -4.27 2.11E-5 Metabolite levels (MHPG)
BRCA cis rs6738490 1 rs12994971 chr2:234178453 SAG chr2:234216309-234255701:+ 0.12 3.92 9.55E-5 Crohn's disease
BRCA cis rs6738490 1 rs12994997 chr2:234173503 SAG chr2:234216309-234255701:+ 0.13 3.98 7.21E-5 Crohn's disease
BRCA cis rs12995491 1 rs12995491 chr2:88527414 THNSL2 chr2:88469835-88486145:+ -0.37 -10.15 3.69E-23 Response to metformin (IC50)